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1

Optical transitions and multiphonon Raman scattering of Cu doped ZnO and MgZnO ceramics

Huso, Jesse, Morrison, John L., Mitchell, James, Casey, Erin, Hoeck, Heather, Walker, Chris, Bergman, Leah, Hlaing Oo, W. M., McCluskey, M. D.

Journal:

Applied Physics Letters

Year:

2009

Language:

english

File:

PDF, 615 KB

english, 2009

2

Screening for 2-Acetyl-1-pyrroline in the Headspace of Rice Using SPME/GC-MS

Grimm, Casey C., Bergman, Christine, Delgado, Janis T., Bryant, Rolfe

Journal:

Journal of Agricultural and Food Chemistry

Year:

2001

Language:

english

File:

PDF, 62 KB

english, 2001

3

Paucity of chimeric gene-transposable element transcripts in theDrosophila melanogastergenome

Mikhail Lipatov, Kapa Lenkov, Dmitri A Petrov, Casey M Bergman

Journal:

Year:

2005

Language:

english

File:

PDF, 969 KB

english, 2005

4

Evidence for stabilizing selection in a eukaryotic enhancer element

Ludwig, Michael Z., Bergman, Casey, Patel, Nipam H., Kreitman, Martin

Journal:

Year:

2000

Language:

english

File:

PDF, 363 KB

english, 2000

5

Evolution of genes and genomes on the Drosophila phylogeny

Clark, Andrew G., Eisen, Michael B., Smith, Douglas R., Bergman, Casey M., Oliver, Brian, Markow, Therese A., Kaufman, Thomas C., Kellis, Manolis, Gelbart, William, Iyer, Venky N.

Journal:

Year:

2007

Language:

english

File:

PDF, 1.26 MB

english, 2007

6

Gene expression divergence recapitulates the developmental hourglass model

Kalinka, Alex T., Varga, Karolina M., Gerrard, Dave T., Preibisch, Stephan, Corcoran, David L., Jarrells, Julia, Ohler, Uwe, Bergman, Casey M., Tomancak, Pavel

Journal:

Year:

2010

Language:

english

File:

PDF, 685 KB

english, 2010

7

Assigning roles to protein mentions: The case of transcription factors

Hui Yang, John Keane, Casey M. Bergman, Goran Nenadic

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 193 KB

english, 2009

8

LINNAEUS: A species name identification system for biomedical literature

Martin Gerner, Goran Nenadic, Casey M Bergman

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 532 KB

english, 2010

9

Benchmarking tools for the alignment of functional noncoding DNA

Daniel A Pollard, Casey M Bergman, Jens Stoye, Susan E Celniker, Michael B Eisen

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 576 KB

english, 2004

10

The transposable elements of theDrosophila melanogastereuchromatin: a genomics perspective

Kaminker, Joshua S, Bergman, Casey M, Kronmiller, Brent, Carlson, Joseph, Svirskas, Robert, Patel, Sandeep, Frise, Erwin, Wheeler, David A, Lewis, Suzanna E, Rubin, Gerald M, Ashburner, Michael, Celni

Journal:

Year:

2002

Language:

english

File:

PDF, 95 KB

english, 2002

11

Text mining for biology - the way forward: opinions from leading scientists

Russ B Altman, Casey M Bergman, Judith Blake, Christian Blaschke…

Journal:

Year:

2008

Language:

english

File:

PDF, 229 KB

english, 2008

12

Recurrent insertion and duplication generate networks of transposable element sequences in theDrosophila melanogastergenome

Casey M Bergman, Hadi Quesneville, Dominique Anxolabéhère…

Journal:

Year:

2006

Language:

english

File:

PDF, 1.01 MB

english, 2006

13

Assessing the impact of comparative genomic sequence data on the functional annotation of theDrosophilagenome

Casey M Bergman, Barret D Pfeiffer, Diego E Rincón-Limas, Roger A Hoskins…

Journal:

Year:

2002

Language:

english

File:

PDF, 668 KB

english, 2002

14

Science and policy on endocrine disrupters must not be mixed: a reply to a “common sense” intervention by toxicology journal editors

Bergman, Åke, Andersson, Anna-Maria, Becher, Georg, van den Berg, Martin, Blumberg, Bruce, Bjerregaard, Poul, Bornehag, Carl-Gustaf, Bornman, Riana, Brandt, Ingvar, Brian, Jayne V, Casey, Stephanie C,

Journal:

Environmental Health

Year:

2013

Language:

english

File:

PDF, 158 KB

english, 2013

15

Hydroalkoxylation Catalyzed by a Gold(I) Complex Encapsulated in a Supramolecular Host

Wang, Z. Jane, Brown, Casey J., Bergman, Robert G., Raymond, Kenneth N., Toste, F. Dean

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.58 MB

english, 2011

16

Enantioselective Catalysis of the Aza-Cope Rearrangement by a Chiral Supramolecular Assembly

Brown, Casey J., Bergman, Robert G., Raymond, Kenneth N.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1011 KB

english, 2009

17

General discussion

Bergman, I., Conway, B. E., Bewick, A., Kuwana, T., McIntyre, J. D. E., Gardner, C. L., Casey, E. J., Barrett, M. A., Angerstein-Kozlowska, H., Kolb, D. M., Keddam, M., McQuillan, A. J., Clarke, J. S.

Journal:

Faraday Discussions of the Chemical Society

Year:

1973

Language:

english

File:

PDF, 1.59 MB

english, 1973

18

Low temperature LO-phonon dynamics of MgZnO nanoalloys

Huso, Jesse, Morrison, John L., Hoeck, Heather, Casey, Erin, Bergman, Leah, Pounds, T. D., Norton, M. G.

Journal:

Applied Physics Letters

Year:

2007

Language:

english

File:

PDF, 457 KB

english, 2007

19

A proposal for the reference-based annotation of de novo transposable element insertions

Bergman, Casey M.

Journal:

Mobile Genetic Elements

Year:

2012

Language:

english

File:

PDF, 400 KB

english, 2012

20

Supramolecular Catalysis in Metal–Ligand Cluster Hosts

Brown, Casey J., Toste, F. Dean, Bergman, Robert G., Raymond, Kenneth N.

Journal:

Chemical Reviews

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

21

The Role of Liver Glucosensors in the Integrated Sympathetic Response Induced by Deep Hypoglycemia in Dogs

Hamilton-Wessler, Marianthe, Bergman, Richard N, Halter, Jeffrey B, Watanabe, Richard M, Donovan, Casey M

Journal:

Year:

1994

Language:

english

File:

PDF, 1.27 MB

english, 1994

22

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

Down, Thomas A., Bergman, Casey M., Su, Jing, Hubbard, Tim J. P.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.01 MB

english, 2007

23

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Quesneville, Hadi, Bergman, Casey M., Andrieu, Olivier, Autard, Delphine, Nouaud, Danielle, Ashburner, Michael, Anxolabehere, Dominique

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 284 KB

english, 2005

24

Functional Evolution of a cis-Regulatory Module

Ludwig, Michael Z., Palsson, Arnar, Alekseeva, Elena, Bergman, Casey M., Nathan, Janaki, Kreitman, Martin

Journal:

Year:

2005

Language:

english

File:

PDF, 4.69 MB

english, 2005

25

Principles of Genome Evolution in the Drosophila melanogaster Species Group

Ranz, José M., Maurin, Damien, Chan, Yuk S., von Grotthuss, Marcin, Hillier, LaDeana W., Roote, John, Ashburner, Michael, Bergman, Casey M.

Journal:

Year:

2007

Language:

english

File:

PDF, 697 KB

english, 2007

26

Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster

Richardson, Mark F., Weinert, Lucy A., Welch, John J., Linheiro, Raquel S., Magwire, Michael M., Jiggins, Francis M., Bergman, Casey M., Kopp, Artyom

Journal:

Year:

2012

Language:

english

File:

PDF, 739 KB

english, 2012

27

Primacy of Liver Glucosensors in the Sympathetic Response to Progressive Hypoglycemia

Casey M. Donovan, Marianthe Hamilton-Wessler, Jeffrey B. Halter and Richard N. Bergman

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 1.05 MB

english, 1994

28

Manufacturing doubt about endocrine disrupter science – A rebuttal of industry-sponsored critical comments on the UNEP/WHO report “State of the Science of Endocrine Disrupting Chemicals 2012”

Bergman, Åke, Becher, Georg, Blumberg, Bruce, Bjerregaard, Poul, Bornman, Riana, Brandt, Ingvar, Casey, Stephanie C., Frouin, Heloise, Giudice, Linda C., Heindel, Jerrold J., Iguchi, Taisen, Jobling,

Journal:

Regulatory Toxicology and Pharmacology

Year:

2015

Language:

english

File:

PDF, 382 KB

english, 2015

29

Unique transposon landscapes are pervasive across Drosophila melanogaster genomes

Rahman, Reazur, Chirn, Gung-wei, Kanodia, Abhay, Sytnikova, Yuliya A., Brembs, Björn, Bergman, Casey M., Lau, Nelson C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 13.43 MB

english, 2015

30

Improved scope and diastereoselectivity of C–H activation in an expanded supramolecular host

Brown, Casey J., Kokai, Akos, Miller, Gregory M., Bergman, Robert G., Raymond, Kenneth N.

Journal:

Supramolecular Chemistry

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

31

Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster

Miller, Danny E., Cook, Kevin R., Yeganeh Kazemi, Nazanin, Smith, Clarissa B., Cockrell, Alexandria J., Hawley, R. Scott, Bergman, Casey M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

32

Drosophila Polymorphism Database (DPDB)A Portal for Nucleotide Polymorphism in Drosophila

Casillas, Sònia, Egea, Raquel, Petit, Natalia, Bergman, Casey M., Barbadilla, Antonio

Journal:

Year:

2007

Language:

english

File:

PDF, 865 KB

english, 2007

33

Drosophilainnate immunity: regional and functional specialization of prophenoloxidases

Dudzic, Jan P., Kondo, Shu, Ueda, Ryu, Bergman, Casey M., Lemaitre, Bruno

Journal:

Year:

2015

Language:

english

File:

PDF, 3.06 MB

english, 2015

34

ChemInform Abstract: Supramolecular Catalysis in Metal-Ligand Cluster Hosts

Brown, Casey J., Toste, F. Dean, Bergman, Robert G., Raymond, Kenneth N.

Journal:

Year:

2015

File:

PDF, 12 KB

2015

35

The detection of hypoglycemia by portal vein glucosensors

Donovan, Casey M., Hevener, Andrea L, Bergman, Richard N.

Journal:

Current Opinion in Endocrinology & Diabetes

Year:

1998

File:

PDF, 2.64 MB

1998

36

Glutamate in Pediatric Obsessive-Compulsive Disorder and Response to Cognitive-Behavioral Therapy: Randomized Clinical Trial

O’Neill, Joseph, Piacentini, John, Chang, Susanna, Ly, Ronald, Lai, Tsz M, Armstrong, Casey C, Bergman, Lindsey, Rozenman, Michelle, Peris, Tara, Vreeland, Allison, Mudgway, Ross, Levitt, Jennifer G,

Journal:

Neuropsychopharmacology

Year:

2017

Language:

english

File:

PDF, 2.64 MB

english, 2017

37

McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole Genome Shotgun Sequencing Data

Nelson, Michael G., Linheiro, Raquel S., Bergman, Casey M.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 443 KB

english, 2017

38

GaN-based Field-Effect Transistors with Laterally Gated Two-Dimensional Electron Gas

Shinohara, Keisuke, King, Casey, Carter, Andrew D., Regan, Eric J., Arias, Andrea, Bergman, Joshua, Urteaga, Miguel, Brar, Berinder

Journal:

IEEE Electron Device Letters

Year:

2018

Language:

english

File:

PDF, 763 KB

english, 2018

39

Conserved noncoding elements influence the transposable element landscape in Drosophila

Manee, Manee M, Jackson, John, Bergman, Casey M

Journal:

Genome Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 639 KB

english, 2018

40

Bringing PLOS Genetics Editors to Preprint Servers

Barsh, Gregory S., Bergman, Casey M., Brown, Christopher D., Singh, Nadia D., Copenhaver, Gregory P.

Journal:

Year:

2016

Language:

english

File:

PDF, 361 KB

english, 2016

41

Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast

Barton, Michael D., Delneri, Daniela, Oliver, Stephen G., Rattray, Magnus, Bergman, Casey M., Bähler, Jürg

Journal:

Year:

2010

Language:

english

File:

PDF, 283 KB

english, 2010

42

pubmed2ensembl: A Resource for Mining the Biological Literature on Genes

Baran, Joachim, Gerner, Martin, Haeussler, Maximilian, Nenadic, Goran, Bergman, Casey M., Aerts, Stein

Journal:

Year:

2011

Language:

english

File:

PDF, 857 KB

english, 2011

43

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

Carr, Martin, Bensasson, Douda, Bergman, Casey M., Stajich, Jason E.

Journal:

Year:

2012

Language:

english

File:

PDF, 917 KB

english, 2012

44

Traumatic brain injury reduction in athletes by neck strengthening (TRAIN)

Toninato, Joseph, Casey, Hannah, Uppal, Mohit, Abdallah, Tessneem, Bergman, Thomas, Eckner, JamesT., Samadani, Uzma

Journal:

Contemporary Clinical Trials Communications

Year:

2018

Language:

english

File:

PDF, 568 KB

english, 2018

45

Photogenic Flies—A review of Chyb and Gompel's Atlas of Drosophila Morphology: Wild-type and Classical Mutants

Prokop, Andreas, Bergman, Casey M.

Journal:

Frontiers in Genetics

Year:

2013

Language:

english

File:

PDF, 462 KB

english, 2013

46

Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

Bergman, Casey M.

Journal:

Year:

2018

Language:

english

File:

PDF, 931 KB

english, 2018

47

Whole genome screen reveals a novel relationship between Wolbachia levels and Drosophila host translation

Grobler, Yolande, Yun, Chi Y., Kahler, David J., Bergman, Casey M., Lee, Hangnoh, Oliver, Brian, Lehmann, Ruth, McGraw, Elizabeth Ann

Journal:

Year:

2018

Language:

english

File:

PDF, 15.56 MB

english, 2018

48

Trapping a somatic endogenous retrovirus into a germline piRNA cluster immunizes the germline against further invasion

Duc, Céline, Yoth, Marianne, Jensen, Silke, Mouniée, Nolwenn, Bergman, Casey M., Vaury, Chantal, Brasset, Emilie

Journal:

Year:

2019

Language:

english

File:

PDF, 2.63 MB

english, 2019

49

Systems biology of energetic and atomic costs in the yeast transcriptome, proteome, and metabolome

Barton, Michael, Papp, Balazs, Delneri, Daniela, Oliver, Stephen, Rattray, Magnus, Bergman, Casey

Journal:

Nature Precedings

Year:

2008

Language:

english

File:

PDF, 323 KB

english, 2008

50

Systems biology of energetic and atomic costs in the yeast transcriptome, proteome, and metabolome

Barton, Michael, Papp, Balazs, Delneri, Daniel, Oliver, Stephen, Rattray, Magnus, Bergman, Casey

Journal:

Nature Precedings

Year:

2008

Language:

english

File:

PDF, 323 KB

english, 2008